Marine Biology

Molecular cloning and functional study of cyclic GMP-AMP synthase from Crassostrea gigas

  • BAI Jing , 1, 2 ,
  • MAO Fan 2 ,
  • LIU Kelin 2 ,
  • SONG Jingchen 2 ,
  • YU Ziniu 2 ,
  • ZHANG Yang , 2
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  • 1. Jinan University, Guangzhou 510632, China
  • 2. Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Science, Guangzhou 510301, China
ZHANG Yang. email:

Copy editor: SUN Cuici

Received date: 2024-03-22

  Revised date: 2024-04-10

  Online published: 2024-05-21

Supported by

National Key Research and Development Program of China(2022YFD2400301)

National Natural Science Foundation of China(32073002)

National Natural Science Foundation of China(U22A20533)

9th Young Elite Scientists Sponsorship Program(2023QNRC001)

Science and Technology Planning Project of Guangdong Province, China(2023A04J0096)

Science and Technology Planning Project of Guangdong Province, China(2024A04J6278)

Abstract

Cyclic GMP-AMP synthase (cGAS) is a critical intracellular sensor that can recognize abnormally located DNA in the cytoplasm and trigger immune responses. To elucidate the critical role of cGAS in the regulation of innate immunity in mollusks, we successfully cloned and analyzed Crassostrea gigas cGAS (CgcGAS). The open reading frame (ORF) of CgcGAS was 1623bp and encoded 540 amino acids with a theoretical molecular weight of 62.3 kDa and a conserved Mab21 domain. Phylogenetic analysis confirmed that CgcGAS was a member of the molluscan cGAS family. Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) results revealed widespread expression of CgcGAS in various tissues, with the highest relative expression in the digestive glands. Subsequently, subcellular localization experiments showed that CgcGAS was observed in both the nucleus and cytoplasm, with a predominant nuclear localization, suggesting that CgcGAS may have played a role in DNA sensing in the nucleus and DNA binding and signaling in the cytoplasm. Furthermore, dual-luciferase reporter gene assays and RNA interference experiments revealed that CgcGAS could activate the NF-κB and ISRE signaling pathways, as well as the expression of downstream inflammation-related factors, such as virus inhibitory protein endoplasmic reticulum-associated interferon-inducible (viperin), tumor necrosis factor (TNF), interleukin-17 (IL-17), and the transcription factor interferon regulatory factor 2/8 (IRF2/8). In conclusion, CgcGAS played a critical role in the signal transduction process of innate immune responses in Crassostrea gigas.

Cite this article

BAI Jing , MAO Fan , LIU Kelin , SONG Jingchen , YU Ziniu , ZHANG Yang . Molecular cloning and functional study of cyclic GMP-AMP synthase from Crassostrea gigas[J]. Journal of Tropical Oceanography, 2025 , 44(1) : 24 -34 . DOI: 10.11978/2024067

先天免疫是无脊椎动物抵御病原体的第一道防线(Canesi et al, 2002; Li et al, 2018a)。其中, 模式识别受体(pattern recognition receptors, PRRs)可以检测病原相关分子模式(pathogen-associated molecular patterns, PAMP), 从而激活免疫通路, 抵御病原入侵(Wu et al, 2014a; Cai et al, 2021)。动物中的PRRs可分为四个主要的亚家族, 包括Toll样受体、核苷酸结合域富含亮氨酸重复序列/NOD样受体、视黄酸诱导基因-I样受体和C型凝集素受体等(Li et al, 2021)。但是最近发现了全新且广泛存在于生物体内的PRRs家族cGAS样受体(cGAS-like receptors, cGLR) (Li et al, 2023)。cGAS是核苷酸转移酶家族(nucleotidyl transferase, NTase)成员, 在细胞中通常以无活性状态存在, 它能以非序列特异性的方式识别胞质中错误定位的双链DNA (double-stranded DNA, dsDNA), 包括多种DNA病毒、某些逆转录病毒、细菌病原体等(Liu et al, 2020)。cGAS与DNA结合后构象改变为活性状态, 催化GTP和ATP转化为cyclic GMP-AMP (cGAMP) (Li et al, 2018b; Hopfner et al, 2020; Liu et al, 2020)。环二核苷酸(cyclic dinucleotides, CDNs)首先在细菌中被描述, 细菌直接产生的CDNs包括cyclic diGMP、cyclic diAMP和3′3′-cGAMP (Wu et al, 2013; Motwani et al, 2019 )。而哺乳动物cGAS催化产生2′3′-cGAMP, 在化学结构上与细菌产生的3′3′-cGAMP不同(Diner et al, 2013; Gao et al, 2013)。不过, 2'3'-cGAMP以及细菌直接产生的CDNs均可结合并激活内质网上的适应性蛋白-干扰素基因刺激蛋白(stimulator of interferon genes, STING), 从而招募并激活蛋白激酶IκB激酶(IkappaB kinase, IKK)和TANK结合激酶1 (TANK-binding kinase 1, TBK1), 后者又激活转录因子NF-κB和IRF3, 以诱导I型干扰素(interferon, IFN)及其他炎症信号转导(Zhang et al, 2013; Yu et al, 2019)。
虽然海葵和人在进化上分化超过五亿年, 但是二者均鉴定到了cGAS和STING蛋白(Kranzusch et al, 2015), 揭示了cGAS具有古老的起源。最近发现果蝇cGAS样受体1-cGLR1作为双链RNA传感器识别dsRNA产生3'2'-cGAMP激活STING并限制病毒复制, 提示了cGAS同源物可能在动物先天免疫中发挥广泛作用(Slavik et al, 2021)。值得注意的是, cGLRs广泛存在于后生动物中, 一些刺胞动物和双壳类动物, 例如珊瑚Stylophora pistillata和长牡蛎(Crassostrea gigas)的基因组中编码大量cGLR(cGAS-like receptors) (Li et al, 2023), 表明cGAS可能在后生动物中发挥重要作用, 然而它们的具体功能尚无详细报道。
长牡蛎属于软体动物门无脊椎动物, 目前的研究结果表明无脊椎动物没有特异性免疫系统, 只依赖天然免疫来防御病原感染, 维持机体的健康和正常生命活动。长牡蛎基因组中cGLR家族的数量扩张, 从免疫系统进化和自身免疫防御机制两个角度都具有非常重要的研究价值。
因此, 本研究克隆了长牡蛎cGAS家族成员之一, 初步研究了它的序列特征、进化地位及功能, 为牡蛎体内cGAS-STING信号通路的研究提供了一定的理论基础。

1 材料与方法

1.1 实验材料

实验所用长牡蛎均取自山东省青岛市, 暂养于循环人工海水中以适应实验室条件, 温度保持22~25℃、盐度为25‰。实验个体2龄, 平均壳高10cm。两周后随机选取9个个体, 收集围心腔血淋巴液, 并立即4000g离心10min以收集血淋巴细胞。同时收集100mg鳃、外套膜、闭壳肌、心脏、消化腺、性腺和唇瓣等组织置于1mL Trizol中并用冷冻研磨仪研磨组织, 共三个重复, 提取总RNA进行基因克隆与组织分布分析。

1.2 总RNA的提取

采用TRizol (Invitrogen)法提取组织RNA。具体操作如下: 向TRizol匀浆的组织中加入200µL氯仿, 剧烈振荡15s, 混匀后室温放置5min; 随后在4℃条件下12000g离心10min, 吸取上层透明液至一个新EP管中; 向新EP管中加入500µL预冷的异丙醇, 混匀后静置30min; 4℃ 12000g离心12min, 弃上清, 75%乙醇悬浮沉淀, 洗去杂质; 4℃ 12000g离心5min, 弃上清, 加入20µL 二甲基亚硝基乙酰胺处理水溶解RNA。用Nanodrop 2000 (Thermo Scientific)检测RNA浓度并通过琼脂糖凝胶电泳检测RNA的完整性。

1.3 长牡蛎环GMP-AMP合酶(CgcGAS)基因克隆

CgcGAS (基因编号为XM_034454337.1)序列信息来自NCBI(National Center for Biotechnology Information database, https://www.ncbi.nlm.nih.gov/).
cDNA模板的合成: 以牡蛎RNA为模板, 使用定量PCR专用反转录试剂PrimeScript™ RT reagent Kit with gDNA Eraser (Perfect Real Time, Takara)根据说明书合成cDNA。先进行DNA酶切酶(DNase I)消化, 反应体系如下: 冰上配制如下反应液混合液, 5×gDNA Eraser Buffer 2μL、 gDNA Eraser 1μL、 Total RNA 1μg、补充无酶无菌水(RNase Free dH2O)至10μL, 在42℃孵育2min; 随后进行反转录反应, 反应液配制在冰上进行, 反应体系如下: DNase I消化后的反应液10μL、 PrimeScript RT Enzyme Mix 1μL、 RT Primer Mix 1μL、5×PrimeScript Buffer 2 (for Real Time) 4μL、RNase Free dH2O 4μL, 37℃反应15min, 85℃反应5s, 反应产物4℃保存。
CgcGAS基因克隆: cDNA模板稀释10倍作为PCR模板, 使用Primer Primer 5.0设计引物, 见表1。利用2×Taq Plus Master Mix (Dye Plus, Vazyme)进行PCR从而获得目的基因, 反应体系如下: 2×Taq Plus Master Mix 12.5μL、上游引物(10μmol·L-1) 1μL、下游引物(10μmol·L-1) 1μL、 模板DNA 1μL、 ddH2O 9.5μL。PCR程序为: 95℃ 3min; (95℃ 15s、降落60—45℃ 15s、72℃ 100s)进行30个循环; 72℃ 5min后终止反应。通过琼脂糖凝胶检测PCR产物, 回收纯化目的片段, 将目的片段与pMD19-T载体连接, 然后转化到DH5α感受态细胞中, 用氨苄青霉素选择性培养基过夜培养后挑选阳性菌落进行菌液PCR, 挑选与目标片段大小一致的菌液送至天一辉远生物科技有限公司测序。
表1 引物信息

Tab. 1 Sequences of designed primers used in this study

引物名称 序列(5′-3′) 用途
cGAS-F1 ATGGTAATCAAATGTCCTAATTGTG ORF克隆
cGAS-R1 TTATTGTAAGAGACCCTCTAGTTCC ORF克隆
pEGFP-N1-cGAS-F TCAGATCTCGAGCTCAAGCTTGCCACCATGGTAATCAAATGTCC pEGFP-N1-cGAS重组质粒
pEGFP-N1-cGAS-R ATGGTGGCGACCGGTGGATCCGATTGTAAGAGACCCTCTAGTTCCCT pEGFP-N1-cGAS重组质粒
PCDNA3.1/V5-His-cGAS-F GCACAGTGGCGGCCGCTCGAGATGGTAATCAAATGTCCTAATTGTGAC pcDNA3.1/V5-His-cGAS重组质粒
PCDNA3.1/V5-His-cGAS-R AGGCTTACCTTCGAAGGGCCCTTGTAAGAGACCCTCTAGTTCCCTG pcDNA3.1/V5-His-cGAS重组质粒
dscGAS-F CGACAAAACAAAGATCGACTACAAC cGAS-RNAi
dscGAS-R CAGTCTGGATTTCTCTTGCATCCTT cGAS-RNAi
dscGAS-F-T7 TAATACGACTCACTATAGGCGACAAAACAAAGATCGACTACAAC cGAS-RNAi
dscGAS-R-T7 TAATACGACTCACTATAGGCAGTCTGGATTTCTCTTGCATCCTT cGAS-RNAi
dsGFP-F GCAAGGGCGAGGAGCTGTTCACCGG GFP-RNAi
dsGFP-R TTGCCGTCCTCCTTGAAGTCGATGC GFP-RNAi
dsGFP-F-T7 TAATACGACTCACTATAGGGCAAGGGCGAGGAGCTGTTCACCGG GFP-RNAi
dsGFP-R-T7 TAATACGACTCACTATAGGTTGCCGTCCTCCTTGAAGTCGATGC GFP-RNAi
cGAS-F2 GGAAAGACGACAGGGACGG qRT-PCR
cGAS-R2 TGTCTGGAGAACCCCTTTGG qRT-PCR
viperin-F CTGAAACCCATCAGTGTCAACTACC qRT-PCR
viperin-R GACAATGAAGGGCTCGCCAC qRT-PCR
IRF2-F ACTTCCGCTG