Marine Biology

Comparison of genetic diversity among stocks of Oreochromis niloticus, O. aureus and red tilapia based on microsatellite DNA

  • Li-Chi-Hao ,
  • Yu-Da-Hui ,
  • Huang-Gui-Ju ,
  • Du-Bo ,
  • Fu-Yun ,
  • Tong-Xin ,
  • Guo-Yi-Hui ,
  • Xie-Wei
Expand
  • 1. Key Lab. of South China Sea Fishery Resources Exploitation and Utilization, Ministry of Agriculture; South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China 2. Shanghai Ocean University, Shanghai 210306, China 3. Fisheries College, Huazhong Agricultural University, Wuhan 430070, China 4. Guangdong National Elite Tilapia Farm, Guangzhou 511453, China

Received date: 2010-11-09

  Revised date: 2011-03-23

  Online published: 2012-06-05

Abstract

To provide genetic information for the purpose of selective breeding, comparison of genetic variability among the three cultured stocks of Oreochromis niloticus, O. aureus and<> red tilapia<> O. sp. was made using nine microsatellite loci. In total 60 alleles were detected from 109 individuals. The mean numbers of alleles were 4.11, 1.33 and 3.44 with average polymorphism information contents being 0.580, 0.077 and 0.466, respectively, for the Nile, aurea and red tilapia stocks. The observed heterozygosities averaged 0.528, 0.056 and 0.491, respectively, for the three cultured stocks, while the expected heterozygosities averaged 0.644, 0.091 and 0.526, respectively . D values of heterozygote deviation were - 0.148, - 0.222 and - 0.044, respectively, showing heterozygote deficiency in the three tilapia stocks . Chi-square tests showed that most loci in the three stocks deviated from Hardy-Weinberg equilibrium, suggesting occurrence of genetic drift possibly due to founder effect. S ignificant genetic differences were observed among the three stocks (pairwise genetic differentiation index F ST : 0.329 to 0.656, P<0.01). The genetic distance between O. niloticus and red tilapia was the lowest ( 0.47 ). These observations indicated that O. niloticus has the highest genetic diversity, whereas O. aureus has the lowest; so there is still some selective breeing potential for O. niloticus and red tilapia , whereas new germplasms of O. aureus should be imported for supplement .

Cite this article

Li-Chi-Hao , Yu-Da-Hui , Huang-Gui-Ju , Du-Bo , Fu-Yun , Tong-Xin , Guo-Yi-Hui , Xie-Wei . Comparison of genetic diversity among stocks of Oreochromis niloticus, O. aureus and red tilapia based on microsatellite DNA[J]. Journal of Tropical Oceanography, 2012 , 31(2) : 102 -109 . DOI: 10.11978/j.issn.1009-5470.2012.02.014

References

李思发, 蔡完其. 我国尼罗罗非鱼和奥利亚罗非鱼养殖群体的遗传渐渗[J]. 水产学报, 1995, 19(2): 105-111. 赵金良, 李思发, 李晨虹, 等. 不同品系尼罗罗非鱼生化遗传标志研究[J]. 上海水产大学学报, 1997, 6(3): 166-170. 曹萤, 夏德全. 尼罗非鲫和奥利亚非鲫线粒体遗传差异的研究[J]. 水产学报, 1997, 21(4): 360-365. 许玉德, 钟建兴, 郑森林, 等. 尼罗罗非鱼和奥利亚罗非鱼性腺的分析[J]. 厦门大学学报, 1999, 38(5): 793-796. 夏德全, 曹萤, 吴婷婷, 等. 用RAPD分析对罗非鱼遗传变异的研究及其对杂种优势的应用[J]. 水产学报, 1999, 23(1): 27-32. 杜诚, 卢迈新, 叶星, 等. 五个罗非鱼群体的遗传分析与分子标记[J]. 大连水产学院报, 2005, 20(1): 26-28. BARDAKCI F, SKIBINSKI D O. Application of the RAPD technique in tilapia fish species and subspecies identification[J]. Heredity, 1994, 73: 117-123. HASSANIEN H A, ELNADY M, OBEIDA A, et al. Genetic diversity of Nile tilapia populations revealed by randomly amplified polymorphic DNA[J]. Aquaculture Research, 2004, 35: 587-593. LIU Z J, CORDES J F. DNA marker technologies and their applications in aquaculture genetics[J]. Aquaculture, 2004, 238(1): 1-37. RUTTEN M J M, KOMEN H, DEERENBERG R M, et al. Genetic characterization of four strains of Nile tilapia using microsatellite markers[J]. Animal Genetics, 2004, 35: 93-97. ROMANA-EGUIA M R R, IKEDA M, BASIAO Z U, et al. Genetic diversity in farmed Asian Nile and red hybrid tilapia stocks evaluated from microsatellite and mitochondrial DNA analysis[J]. Aquaculture, 2004, 236(1-4): 131-150. 李莉好, 喻达辉, 黄桂菊, 等. 尼罗罗非鱼、奥利亚罗非鱼及其正、反杂交群体的遗传多样性[J]. 中国水产科学, 2008, 15(4): 585-592. 李学军, 李爱景, 李思发, 等. 萨罗罗非鱼(Sarotherodon melanotheron)与其他5种罗非鱼遗传多样性比较研究[J]. 海洋与湖沼, 2010, 41(1): 85-90. 宋红梅, 白俊杰, 全迎春, 等. 三种罗非鱼的微卫星分子鉴定和遗传结构分析[J]. 农业生物技术学报, 2008, 16(6): 952-958. 宋红梅, 白俊杰, 叶星, 等. 橙色莫桑比克罗非鱼微卫星遗传多样性分析及其与尼罗罗非鱼差异位点的筛选[J].中国水产科学, 2008, 15(3): 400-406. 颜标, 李思发, 蔡完其. 尼罗罗非鱼与萨罗罗非鱼及其正反杂交后代的微卫星分析[J]. 水产学报, 2007, 31(3): 411-415. 郭奕惠, 黄桂菊, 喻达辉. 合浦珠母贝DNA的抽提和RAPD反应体系的优化[J]. 南方水产, 2006, 2(4): 59-64. 王小玉, 喻达辉, 郭奕惠, 等. 七种珍珠贝RAPD鉴别标记的初步研究[J]. 南方水产, 2006, 2(1): 18-22. CARLETON K L, STREELMAN J T, LEE B Y, et al. Rapid isolation of CA microsatellites from the tilapia genome[J]. Animal Genetics, 2002, 33 (2): 140-144. YEH F C, BOYLE T J B. Population genetic analysis of co-dominant and dominant markers and quantitative traits[J]. Belg. J. Bot. 1997, 129(2): 157. BOTSTEIN D, WHITE R L, SKOLNICK M, et al. Construction of a genetic linkage map in man using restriction fragment length polymorphisms[J]. Am J Hum genet, 1980, 32: 314-331. EXCOFFIER L, LAVAL G, SCHNEIDER S. Arlequin (version 3.0): An integrated software package for population genetics data analysis[J]. Evol Bioinform Online, 2005, 1(1): 47-50. 王进科, 夏德全, 吴婷婷.中国奠基群奥利亚罗非鱼遗传多态性的DNA指纹图谱[J]. 南京农业大学学报, 2000, 23(3): 61-63. Wright S. Evolution and the genetics of population: variability within and among natural populations[M]. Chicago: The University of Chicago Press, 1968: 590. 马仲波, 白俊杰, 陈伯端. 红尼罗鱼的选育与养殖利用的研究[J]. 珠江水产, 1989, 11: 46-63. 李家乐, 李思发, 韩风进. 台湾红罗非鱼和尼罗罗非鱼的生长特性与养殖效果的比较[J]. 上海水产大学学报, 2002, 11(1): 1-5. LIAO L C, CHANG S L. Studies on the feasibility of red tilapia culture in saline water[C]//Proceedings of the international symposium on tilapia in aquaculture. Nazareth, Israel: Tel Aviv University, 1988: 424 - 433. LOVSHIN L L. Criteria for selecting Nile tilapia and red tilapia for culture[C]//FITZSIMMONS K, CARVALHO FILHO J. Tilapia aquaculture in the 21st century. Proceedings from the fifth international symposium on tilapia aquaculture, 2000: 49-57. FITZGERALD W J. The red orange tilapia - a hybrid that could become a world favourite[J]. Fish Farming International, 1979, 6(1): 26-27. BEHRENDS L L, NELSON R G, SMITHERMAN R O. Breeding and culture of the red-gild color phase of tilapia[J]. Journal of World Mariculture Society, 1982, 13: 210-220.
Outlines

/