大口鳒线粒体DNA控制区结构和鲽形目鱼类的系统进化初步研究

doi:10.11978/j.issn.1009-5470.2010.06.071

Abstract

Abstract:

Complete control region (CR) of Psettodes erumei mitochondrial genome was determined. Its size is 1,601 bp in length, with a 56 bp tandem repeat at 5’ end and a 8 bp one at 3’ end. Based on the alignment of CR sequences in this species and seven other flatfishes, three domains (the termination associated sequence domain, TAS; the central conserved domains, CSB-F, CSB-E, CSB-D and the conserved sequence block domains, CSB-1, CSB-2, CSB-3) and a Poly-T tract are identified. The difference of base composition of complete CR sequences is greater than that of CR sequence without repeated regions among eight flatfishes, and the variation coefficient of the former is about twice of the latter, which is mainly due to the het-erogenicity as length, base composition and copy numbers of repeated regions. With Carangoides armatus as the outgroup, the molecular phylogenetic relationship of 12 flatfishes was analyzed using the ML and BI methods. The results showed that P. erumei is the most primitive species among the flatfishes. Soleoidei and Pleuronectoidei are clustered into one clade, and then Psettodoidei merges to it. These results are consistent with that based on the morphological analyses.

Key words: mitochondrial DNA, control region, Psettodes erumei, phylogenesis, Pleuronectiformes

ZHANG Yan-chun,KONG Xiao-yu,WANG Zhong-ming. Characterization of mitochondrial control region sequence of Psettodes erumei and phylogenetic analysis of Pleuronectiformes[J].Journal of Tropical Oceanography, 2010, 29(6): 71-78.

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Characterization of mitochondrial control region sequence of Psettodes erumei and phylogenetic analysis of Pleuronectiformes

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