基于S7核糖体蛋白基因部分序列的10种石鲈科鱼类的系统发育关系

doi:10.11978/j.issn.1009-5470.2010.05.098

Abstract

Abstract:

Partial sequences of the 1st intron of S7 ribosomal protein gene among four genera and 10 species of Haemulidae fish were analyzed. A phylogenetic tree was constructed using the MP and NJ methods. The results show that 10 Haemulidae fishes were divided into two clades in the phylogenetic tree: with one clade composed of Hapalogenys and Plectorhynchus, and another, of Pomadasys and Haemulon, so the 10 Haemulidae fishes forming a monophyletic group. The genera Hapa-logenys and Plectorhynchus had a close relationship. Based on genetic distance, Hapalogenys and Haemulon were more closely related than Hapalogenys and Pomadasys. So our study supports the viewpoint that the phylogenetic position of Ha-palogenys was between Plectorhynchus and Haemulon and could not be upgraded to the family of Hapalogeniidae.

Key words: S7 ribosomal protein gene, Haemulidae, phylogeny

LIANG Ri-shen,YANG Guo-hua,LUO Da-ji,ZHONG Shan,ZOU Ji-xing. Phylogenetic relationship of 10 species in haemulidae based on S7 ribosomal protein gene[J].Journal of Tropical Oceanography, 2010, 29(5): 98-102.

References

[1] NELOSN J S. Fishes of the world[M]. New York: John Wiley & Sons INC, 1994: 360-361.

[2] 成庆泰, 郑葆珊. 中国鱼类系统检索[M]. 北京: 科学出版社, 1987: 339-341.

[3] 黄宗国. 中国海洋生物种类与分布[M] 北京: 海洋出版社, 1994: 708-709.

[4] 孟庆闻, 苏锦祥, 缪学祖. 鱼类分类学[M]. 北京: 中国农业出版社, 1994: 696-700.

[5] 伍汉霖, 邵广昭, 赖春福. 拉汉世界鱼类名典[M]. 台北: 水产出版社, 1999: 286-287, 743-744.

[6] 陈清潮, 陈铮. 南沙群岛至华南沿岸的鱼类(二) [M]. 北京: 科学出版社, 2002: 105-106.

[7] 沈世杰. 台湾鱼类检索[M]. 台北: 南天书局有限公司, 1984: 278-280.

[8] 沈世杰. 台湾鱼类志[M]. 台北: 台湾大学动物学系出版, 1993: 360-363.

[9] IWATSUKI Y, NAKABO T. Redescription of Hapologenys nigripinnis (Schlegel in Temminck and Schlegel, 1843),a senior synonym of H.nitens Richardson, 1844, and a new species from Japan[J].Copeia, 2005, 4: 854-867.

[10] LINDEMAN K C, RICHARDS W J. GRUNTS: Haemulidae[C].// RICHARDS W J.Guide to the Early Stages of Atlantic Fishes. Taylor & Francis Group Press, Boca Raton, 2005: 1597-1645.

[11] 任岗, 章群, 钱开诚, 等. 12种石鲈科鱼类线粒体16S rRNA基因的部分序列分析[J]. 热带海洋学报, 2007, 26(3): 48-52.

[12] 朱世华, 郑文娟, 邹记兴, 等. 5种石鲈科鱼类细胞色素b基因序列及分子系统分析[J]. 热带海洋海洋学报, 2006, 4: 42-45.

[13] ROCHA L A, ROCHA C R, LINDEMAN K. Historical biogeography and speciation in the reef fish genus Haemulon(Teleostei: Haemulidae) [J]. Molecular Phylogenetics and Evolution, 2008, 48: 918-928.

[14] 王绪桢, 何舜平, 陈宜瑜. S7核糖体蛋白基因序列变异及其在低等鲤科鱼类中的系统发育意义[J]. 科学通报, 2002, : 47(14): 1089-1094.

[15] CENCCONI F C, CROSIO P, MARIOTTINI, et al. A functional role for some fugu introns larger than the typical short ones: the example of the gene coding for ribosomal protein S7 and snoRNAU17[J]. Necleic Acids Research, 1996, 24(16): 3167-3172.

[16] 王宁, 陈润生. 基于内含子和外显子的系统发育分析的比较[J]. 科学通报, 1999, 44: 2095-2102.

[17] ?Í?AN O, ZARDOYA R, DOADRIO I. Phylogenetic relationships of Middle American cichlids (Cichlidae, Heroini) based on combined evidence from nuclear genes, mtDNA, and morphology[J]. Molecular Phylogenetics and Evolution, 2008, 49: 941-957.

[18] MUSILOVÁ Z, ?Í?AN O, JANKO K. Molecular phylogeny and biogeography of the Neotropical cichlid fish tribe Cichlasomatini (Teleostei: Cichlidae: Cichlasomatinae)[J]. Molecular Phylogenetics and Evolution, 2008, 46: 659-672.

[19] SCHELLY R, SALZBURGER W. Phylogenetic relationships of the lamprologine cichlid genus Lepidiolamprologus (Teleostei: Perciformes) based on mitochondrial and nuclear sequences, suggesting introgressive hybridization[J]. Molecular Phylogenetics and Evolution, 2006, 38: 426-438.

[20] NEAR T J, CHENG C-H C. Phylogenetics of notothenioid fishes (Teleostei: Acanthomorpha): Inferences from mitochondrial and nuclear gene sequences[J]. Molecular Phylogenetics and Evolution, 2008, 47: 832-840.

[21] PILLER K R, BART Jr H L, HURLEY D L. Phylogeography of the greenside darter complex, Etheostoma blennioides (Teleostomi: Percidae): A wide-ranging polytypic taxon[J]. Molecular Phylogenetics and Evolution, 2008, 46: 974-985.

[22] 宋林, 肖永双, 高天翔. S7核糖体蛋白基因片段序列变异与花鲈属鱼类系统发育研究[J]. 海洋湖沼通报, 2008, (2): 152-158.

[23] CHOW S, HAZAMA K. Universal PCR primers for S7 ribosomal protein gene introns in fish[J]. Mol Ecol, 1987, 1255-1256.

[24] TAMURA K, DUDLEY J, NEI M, et al. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0[J]. Molecular Biology and Evolution, 2007, 24: 1596-1599.

[25] SWOFFORD D P. Phylogenetic analysis using parsimony (and other methods) Version 10[M]. Sinauer, Sunderland, MA, 2003.

[26] JOHNSON G D. Percoidei: development and relationships[C] //MOSER H G, RICHARDS W J, COHEN D M, et al. Ontogeny andsystematics of fishes. American Society of Ichthyolologists and Herpetologists, Special Publication. 1984, (1): 464-498.

[27] 任岗, 章群. 石鲈科鱼类的系统发育分析兼论髭鲷属的分类地位[J]. 动物分类学报, 2007, 32(4): 835-841.

[28] 覃映雪, 苏永全, 王胜强, 等. 花尾胡椒鲷染色体组型分析[J]. 海洋学报, 2003, 25(4): 147-150.

[29] 梁君荣, 王军, 苏永全, 等. 重要海水养殖鱼斜带髭鲷和花尾胡椒16S rRNA遗传变异研究[J]. 厦门大学学报：自然科学版, 2006, 45: 207-210.

Phylogenetic relationship of 10 species in haemulidae based on S7 ribosomal protein gene

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