Journal of Tropical Oceanography ›› 2021, Vol. 40 ›› Issue (4): 35-43.doi: 10.11978/2020102CSTR: 32234.14.2020102
• Marine Biology • Previous Articles Next Articles
					
													LONG Chao1,2,3( ), LUO Zhaohe4, WEI Zhangliang1,3,5, YANG Fangfang1,3,5, LI Ru1, LONG Lijuan1,3,5(
), LUO Zhaohe4, WEI Zhangliang1,3,5, YANG Fangfang1,3,5, LI Ru1, LONG Lijuan1,3,5( )
)
												  
						
						
						
					
				
Received:2020-09-10
															
							
																	Revised:2020-11-05
															
							
															
							
																	Online:2021-07-10
															
							
																	Published:2020-11-16
															
						Contact:
								LONG Lijuan   
																	E-mail:longchao@scsio.ac.cn;longlj@scsio.ac.cn
																					Supported by:LONG Chao, LUO Zhaohe, WEI Zhangliang, YANG Fangfang, LI Ru, LONG Lijuan. Morphology and phylogeny of zooxanthellae Effrenium voratum from Luhuitou reef in Sanya, Hainan province[J].Journal of Tropical Oceanography, 2021, 40(4): 35-43.
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													Fig. 2
Scanning electron microscope (SEM) images of strains SYSC-14-11. a) Apical view showing Elongate Apical Vesicle, five apical plates and x plate; b) apical view showing four apical plates; c) apical-ventral view showing cingulum, cingulum plates, sulcus and sulcus plates; d) dorsal view showing episome, cingulum and hyposome; e) antapical-ventral view showing cingulum and sulcus; and f) antapical view showing hyposome, sulcus plates and posterior sulcal plate"
 
														 
													
													Fig. 3
Maximum likelihood and neighbor-Joining phylogenetic tree based on LSU sequences with P. beii as outgroup. Bootstrap test (1000 replicates) are shown next to the branches as ML/NJ. For ML, mode/method: Kimura 2-parameter model; Rate among Sites: Gamma distributed with Invariant sites (G + I); No of Discrete Gamma Categories: 5; Gaps/Missing Data Treatment: Partial deletion; Site coverage cutoff: 95%; Select codon positions: 1st + 2nd + 3rd + Noncoding sites; ML Heuristic Method: nearest-neighbor-interchange (NNI). For NJ, mode/method: Kimura 2-parameter model; Substitutions to Include: d Transition + Transversions; Rate among Sites: Gamma Distributed (G); Gamma Parameter: 5, Pattern among Lineages: Same (Homogeneous); Gaps/Missing Data Treatment: Partial deletion; Site coverage cutoff: 95%; Select codon positions: 1st + 2nd + 3rd + Noncoding sites"
 
														 
													
													Fig. 4
Maximum likelihood and neighbor-Joining phylogenetic tree based on ITS2 region with P. beii as outgroup. Bootstrap test (1000 replicates) are shown next to the branches as ML/NJ. For ML, mode/method: Kimura 2-parameter model; Rate among Sites: Gamma distributed with Invariant sites (G + I); No of Discrete Gamma Categories: 5; Gaps/Missing Data Treatment: Partial deletion; Site coverage cutoff: 95%; Select codon positions: 1st + 2nd + 3rd + Noncoding sites; ML Heuristic Method: nearest-neighbor-interchange (NNI). For NJ, mode/method: Kimura 2-parameter model; Substitutions to Include: d Transition + Transversions; Rate among Sites: Gamma Distributed (G); Gamma Parameter: 5; Pattern among Lineages: Same (Homogeneous); Gaps/Missing Data Treatment: Partial deletion; Site coverage cutoff: 95%; Select codon positions: 1st + 2nd + 3rd + Noncoding sites"
 
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