Journal of Tropical Oceanography

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OSMAC Strategy-Driven Diversity Mining of Secondary Metabolites from Nocardiopsis alba SCSIO XS060 and Prediction of Their Biosynthetic Pathway

ZHANG Xinyu1, 2, DONG Ping3, GE Wen3, JU Jianhua2, GAO Chenghai1, YI Xiangqian1*, MA Junying2*    

  1. 1. Institute of Marine Materia Medica, Guangxi University of Chinese Medicine, Nanning 530200, China;


    2. Guangdong Key Laboratory of Marine Materia medica(South China Sea Institute of Oceanology), Guangzhou 510301, China;


    3. Zunyi Medical University, Zunyi 563000, China;


  • Received:2026-05-31 Revised:2026-06-12 Accepted:2026-06-20
  • Supported by:

     National Natural Science Foundation of China (U23A20107); Guangdong Basic and Applid Basic Rescarch Foundation (2023B1515120053)

Abstract: In this study, a coral-derived actinomycete strain was isolated from samples collected from the Xisha Islands and identified as Nocardiopsis alba SCSIO XS060 based on taxonomic characterization. Guided by the OSMAC (One Strain Many Compounds) strategy, the secondary metabolites of this strain were systematically investigated, leading to the isolation of eight natural products: nocapyrone B (1), marinactinone A (2), nocapyrone L (3), nocapyrone H (4), (2E/5Z)-2-[(4-methoxyphenyl)methylene]-5-(2-methylpropylidene)-3,6-piperazinedione (5), malassezione (6), 2-hydroxy-3-methoxybenzoic acid (7), and 1-hydroxy-4-methoxy-2-naphthoic acid (8). Antibacterial assays demonstrated that compound 5 exhibited antibacterial activity against MRSA (methicillin-resistant Staphylococcus aureus) and Staphylococcus aureus, with MIC (minimal inhibitory concentration) values of 32μg·mL-1 and 16μg·mL-1, respectively, while compound 2 showed weak antibacterial activity against Bacillus subtilis. Through bioinformatic analysis, cluster 9 was identified as the biosynthetic gene cluster responsible for nocapyrone production and was designated as the npr biosynthetic gene cluster. Based on the chemical structures and biosynthetic logic, a plausible biosynthetic pathway was proposed. Overall, this study demonstrated that the OSMAC strategy enabled the discovery of a series of secondary metabolites from Nocardiopsis alba SCSIO XS060, providing a new microbial resource for the production of polyketide or phenazine-related molecules.

Key words: actinomycetes, secondary metabolites, OSMAC, polyketides, phenazines