Journal of Tropical Oceanography ›› 2022, Vol. 41 ›› Issue (5): 121-132.doi: 10.11978/2022005CSTR: 32234.14.2022005
• Marine Biology • Previous Articles Next Articles
CHEN Jingfu1,2,3(), ZHONG Yu1,4, WANG Lei1,2, GUO Yupei1,2, QIU Dajun1,2,3(
)
Received:
2022-01-10
Revised:
2022-04-05
Online:
2022-09-10
Published:
2022-09-30
Contact:
QIU Dajun
E-mail:chenjingfu19@mails.ucas.ac.cn;djqiu@scsio.ac.cn
Supported by:
CLC Number:
CHEN Jingfu, ZHONG Yu, WANG Lei, GUO Yupei, QIU Dajun. Noctiluca scintillans effects on eukaryotic plankton community structure using Environmental DNA analysis in Daya Bay*[J].Journal of Tropical Oceanography, 2022, 41(5): 121-132.
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Tab. 1
Summary of the high-throughput sequencing reads of eDNA in the Daya Bay"
站位 | 原始序列数 | 有效序列数 | 有效比 | OTUs数 |
---|---|---|---|---|
S1≥3µm | 85852 | 83035 | 96.72 | 451 |
S1-pico | 86846 | 82146 | 94.59 | 662 |
S2≥3µm | 86414 | 83728 | 96.89 | 252 |
S2-pico | 80261 | 76850 | 95.75 | 930 |
S3≥3µm | 87818 | 84321 | 96.02 | 164 |
S3-pico | 85984 | 82880 | 96.39 | 464 |
S4≥3µm | 82743 | 79504 | 96.09 | 340 |
S4-pico | 85679 | 82797 | 96.64 | 474 |
S5≥3µm | 87153 | 84519 | 96.98 | 212 |
S5-pico | 87939 | 84033 | 95.56 | 509 |
S6≥3µm | 83419 | 80163 | 96.10 | 251 |
S6-pico | 85651 | 82202 | 95.97 | 582 |
S7≥3µm | 86571 | 83124 | 96.02 | 398 |
S7-pico | 82757 | 80002 | 96.67 | 253 |
站位 | 原始序列数 | 有效序列数 | 有效比 | OTUs数 |
S8≥3µm | 80444 | 77315 | 96.11 | 397 |
S8-pico | 81353 | 76092 | 93.53 | 799 |
S9≥3µm | 80922 | 77302 | 95.53 | 638 |
S9-pico | 81500 | 78682 | 96.54 | 345 |
S10≥3µm. | 87029 | 83148 | 95.54 | 618 |
S10-pico | 82076 | 77528 | 94.46 | 619 |
S11≥3µm | 82660 | 79646 | 96.35 | 223 |
S11-pico | 85237 | 81181 | 95.24 | 527 |
S12≥3µm | 85806 | 82684 | 96.36 | 212 |
S12-pico | 86122 | 81857 | 95.05 | 624 |
Fig. 5
The relative abundance of eukaryotes at different taxonomic levels. (a, c, e, g) showing eukaryotes relative abundance (eukaryote, class, order, family) in ≥ 3 µm sizes eDNA samples, respectively; (b, d, f, h) showing eukaryotes relative abundance (eukaryote, class, order, family) in 0.2 ~ 3 µm sizes eDNA samples, respectively"
Fig. 6
Relative abundance of phytoplankton at different taxonomic levels. (a, c, e, g) showing the phytoplankton relative abundance (eukaryote, class, order, family) in ≥ 3 µm sizes eDNA samples, respectively; (b, d, f, h) showing the phytoplankton relative abundance (eukaryote, class, order, family) in 0.2 ~ 3 µm sizes eDNA samples, respectively"
[1] | 陈汉辉, 杞桑, 1991. 夜光藻摄食和营养繁殖的昼夜节律[J]. 暨南大学学报, 12(3): 104-111. |
CHEN HANHUI, QI SANG, 1991. The feeding and vegetative reproduction diurnal rhythms of Noctiluca scintillans[J]. Journal of Jinan University, 12(3): 104-111. (in Chinese with English abstract) | |
[2] | 郭雨沛, 2021. 大亚湾真核浮游植物基因多样性的季节变化及其扩增引物的比较分析[D]. 北京: 中国科学院大学. |
GUO YUPEI, 2021. Seasonal variation of eukaryotic phytoplankton gene diversity using two primers amplification for 18S rDNA V4 and V9 regions in Daya Bay[D]. Beijing: University of Chinese Academy of Sciences. (in Chinese with English abstract) | |
[3] | 华泽爱, 1994. 赤潮灾害[M]. 北京: 海洋出版社:10-12. |
HUA ZEAI, 1994. Red tide[M]. Beijing: Ocean Press: 10-12. (in Chinese) | |
[4] | 马婕, 2019. 大亚湾浮游动物主要功能群的摄食及其对环境变化的响应[D]. 上海: 上海海洋大学. |
MA JIE, 2019. Feeding of the main functional groups of zooplankton in Daya Bay and its response to environmental changes[D]. Shanghai: Shanghai Ocean University. (in Chinese with English abstract) | |
[5] | 齐雨藻, 邹景忠, 梁松, 等, 2003. 中国沿海赤潮[M]. 北京: 科学出版社: 208-220. (in Chinese) |
[6] | 孙东, 赵冬至, 文世勇, 等, 2010. 夜光藻赤潮与环境因子关系的模糊分析[J]. 海洋环境科学, 29(1): 70-75. |
SUNDONG, ZHAO DONGZHI, WEN SHIYONG, et al, 2010. Fuzzy analysis on relationship between Noctiluca scintillans blooms and environmental factors[J]. Marine Environmental Science, 29(1): 70-75. (in Chinese with English abstract) | |
[7] | 孙振宇, 陈照章, 杨龙奇, 等, 2020. 大亚湾及周边海区潮流和余流的季节变化特征[J]. 厦门大学学报(自然科学版), 59(2): 278-286. |
SUN ZHENYU, CHEN ZHAOZHANG, YANG LONGQI, et al, 2020. Seasonal variation of the tidal current and residual current in the Daya Bay and its surrounding area[J]. Journal of Xiamen University (Natural Science), 59(2): 278-286. (in Chinese with English abstract) | |
[8] | 万艳, 2020. 适宜平潭海域夜光藻赤潮发生的水温和气象条件统计分析[J]. 海洋预报, 37(6): 65-73. |
WAN YAN, 2020. Statistical analysis of water temperature and meteorological conditions favorable for the occurrence of Noctiluca scintillans red tide in Pingtan sea area[J]. Marine Forecasts, 37(6): 65-73. (in Chinese with English abstract) | |
[9] | 王友绍, 王肇鼎, 黄良民, 2004. 近20年来大亚湾生态环境的变化及其发展趋势[J]. 热带海洋学报, 23(5): 85-95. |
WANG YOUSHAO, WANG ZHAODING, HUANG LIANGMIN, 2004. Environment changes and trends in Daya Bay in recent 20 years[J]. Journal of Tropical Oceanography, 23(5): 85-95. (in Chinese with English abstract) | |
[10] | 吴瑞贞, 林端, 马毅, 2007. 南海夜光藻赤潮概况及其对水文气象的适应条件[J]. 台湾海峡, 26(4): 590-595. |
WU RUIZHEN, LIN DUAN, MA YI, 2007. Survey and adapted hydro-meteorological conditions of Noctiluca scintillans red tides in South China Sea[J]. Journal of Oceanography in Taiwan Strait, 26(4): 590-595. (in Chinese with English abstract) | |
[11] | 郑炳锋, 刘炜明, 2010. 福州近海海域赤潮灾害及预警管理[J]. 中国水产, (5): 17-19. (in Chinese) |
[12] | 朱艾嘉, 黄良民, 许战洲, 2008. 氮、磷对大亚湾大鹏澳海区浮游植物群落的影响: Ⅰ. 叶绿素a与初级生产力[J]. 热带海洋学报, 27(1): 38-45. |
ZHU AIJIA, HUANG LIANGMIN, XU ZHANZHOU, 2008. Impacts of nitrogen and phosphorus on phytoplankton community structure in Dapeng’ao area of Daya Bay: Ⅰ. Chlorophyll a and primary productivity[J]. Journal of Tropical Oceanography, 27(1): 38-45. (in Chinese with English abstract) | |
[13] |
朱艾嘉, 黄良民, 林秋艳, 等, 2009. 氮、磷对大亚湾大鹏澳海区浮游植物群落的影响: Ⅱ. 种类组成[J]. 热带海洋学报, 28(6): 103-111.
doi: 10.11978/j.issn.1009-5470.2009.06.103 |
ZHU AIJIA, HUANG LIANGMIN, LIN QIUYAN, et al, 2009. Influence of nitrogen and phosphorus on phytoplankton community structure in the Dapeng’ao Bay, Daya Bay: Ⅱ. Species composition[J]. Journal of Tropical Oceanography, 28(6): 103-111. (in Chinese with English abstract) | |
[14] | BLAXTER M, MANN J, CHAPMAN T, et al, 2005. Defining operational taxonomic units using DNA barcode data[J]. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 360(1462): 1935-1943. |
[15] |
COATS D W, 1999. Parasitic life styles of marine dinoflagellates[J]. The Journal of Eukaryotic Microbiology, 46(4): 402-409.
doi: 10.1111/j.1550-7408.1999.tb04620.x |
[16] |
DEINER K, BIK H M, MÄCHLER E, et al, 2017. Environmental DNA metabarcoding: Transforming how we survey animal and plant communities[J]. Molecular Ecology, 26(21): 5872-5895.
doi: 10.1111/mec.14350 pmid: 28921802 |
[17] |
ENOMOTO Y, 1956. On the occurrence and the food of Noctiluca scintillans (MACARTNEY) in the waters adjacent to the west coast of Kyushu, with special reference to the possibility of the damage caused to the fish eggs by that plankton[J]. Bulletin of the Japanese Society of Scientific Fisheries, 22(2): 82-88.
doi: 10.2331/suisan.22.82 |
[18] |
GÓMEZ F, SOUISSI S, 2007. The distribution and life cycle of the dinoflagellate Spatulodinium pseudonoctiluca (Dinophyceae, Noctilucales) in the northeastern English Channel[J]. Comptes Rendus Biologies, 330(3): 231-236.
doi: 10.1016/j.crvi.2007.02.002 |
[19] |
HALLEGRAEFF G M, ALBINSSON M E, DOWDNEY J, et al, 2019. Prey preference, environmental tolerances and ichthyotoxicity by the red-tide dinoflagellate Noctiluca scintillans cultured from Tasmanian waters[J]. Journal of Plankton Research, 41(4): 407-418.
doi: 10.1093/plankt/fbz037 |
[20] |
HARRISON P J, FURUYA K, GLIBERT P M, et al, 2011. Geographical distribution of red and green Noctiluca scintillans[J]. Chinese Journal of Oceanology and Limnology, 29(4): 807-831.
doi: 10.1007/s00343-011-0510-z |
[21] |
JERDE C L, MAHON A R, CHADDERTON W L, et al, 2011. “Sight-unseen” detection of rare aquatic species using environmental DNA[J]. Conservation Letters, 4(2): 150-157.
doi: 10.1111/j.1755-263X.2010.00158.x |
[22] |
LÜ SONGHUI, CEN JINGYI, 2019. Spatio-temporal variations of Harmful algal blooms along the coast of Guangdong, Southern China during 1980—2016[J]. Journal of Oceanology and Limnology, 37(2): 535-551.
doi: 10.1007/s00343-019-8088-y |
[23] | LIU XUEJUN, WONG C K, 2006. Seasonal and spatial dynamics of Noctiluca scintillans in a semi-enclosed bay in the northeastern part of Hong Kong[J]. Botanica Marina, 49(2): 145-150. |
[24] |
MA YAN’E, KE ZHIXIN, HUANG LIANGMIN, et al, 2014. Identification of human-induced perturbations in Daya Bay, China: Evidence from plankton size structure[J]. Continental Shelf Research, 72: 10-20.
doi: 10.1016/j.csr.2013.10.012 |
[25] |
NISHITANI G, SHIROMOTO M, SATO-OKOSHI W, et al, 2020. Molecular approach for analysis of in situ feeding by the dinoflagellate Noctiluca scintillans[J]. Harmful Algae, 99: 101928.
doi: 10.1016/j.hal.2020.101928 |
[26] |
PIONTKOVSKI S A, SERIKOVA I M, EVSTIGNEEV V P, et al, 2021. Seasonal blooms of the dinoflagellate algae Noctiluca scintillans: Regional and global scale aspects[J]. Regional Studies in Marine Science, 44: 101771.
doi: 10.1016/j.rsma.2021.101771 |
[27] |
QIU DAJUN, HUANG LIANGMIN, LIU SHENG, et al, 2011. Nuclear, mitochondrial and plastid gene phylogenies of Dinophysis miles (Dinophyceae): Evidence of variable types of chloroplasts[J]. PLoS One, 6(12): e29398.
doi: 10.1371/journal.pone.0029398 |
[28] |
QIU DAJUN, HUANG LIANGMIN, ZHUANG YUNYUN, et al, 2021. Dinoflagellate-targeted PCR reveals highly abundant and diverse communities of parasitic dinoflagellates in and near Zhubi Reef, South China Sea[J]. Coral Reefs, 40(6): 1931-1939.
doi: 10.1007/s00338-021-02168-w |
[29] |
QUEVEDO M, GONZALEZ-QUIROS R, ANADON R, 1999. Evidence of heavy predation by Noctiluca scintillans on Acartia clausi (Copepoda) eggs off the central Cantabrian coast (NW Spain)[J]. Oceanologica Acta, 22(1): 127-131.
doi: 10.1016/S0399-1784(99)80039-5 |
[30] |
ŞENTÜRK Y, ESENSOY F B, AYTAN Ü, 2020. Seasonal and spatial distribution of Noctilucoid dinoflagellates (Noctilucales, Dinophyceae) in the Southeastern Black Sea[J]. Regional Studies in Marine Science, 40: 101511.
doi: 10.1016/j.rsma.2020.101511 |
[31] |
SHEHZAD W, RIAZ T, NAWAZ M A, et al, 2012. Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan[J]. Molecular Ecology, 21(8): 1951-1965.
doi: 10.1111/j.1365-294X.2011.05424.x pmid: 22250784 |
[32] |
SONG XINGYU, LI YAO, XIANG CHENHUI, et al, 2021. Nitrogen and phosphorus enrichments alter the dynamics of the plankton community in Daya Bay, northern South China Sea: results of mesocosm studies[J]. Marine and Freshwater Research, 72(11): 1632-1642.
doi: 10.1071/MF21097 |
[33] |
ZHANG LING, XIONG LANLAN, LI JINLONG, et al, 2021. Long-term changes of nutrients and biocenoses indicating the anthropogenic influences on ecosystem in Jiaozhou Bay and Daya Bay, China[J]. Marine Pollution Bulletin, 168: 112406.
doi: 10.1016/j.marpolbul.2021.112406 |
[34] |
ZHANG SHUWEN, HARRISON P J, SONG SHUQUN, et al, 2017. Population dynamics of Noctiluca scintillans during a bloom in a semi-enclosed bay in Hong Kong[J]. Marine Pollution Bulletin, 121(1-2): 238-248.
doi: 10.1016/j.marpolbul.2017.06.025 |
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